/home/anaconda3/bin/stats.sh in=/media/Assembly/Assembly_output_masked.fasta
A C G T N IUPAC Other GC GC_stdev
0.2895 0.2108 0.2105 0.2892 0.4155 0.0000 0.0000 0.4214 0.1505
Main genome scaffold total: 2976459
Main genome contig total: 5198254
Main genome scaffold sequence total: 2412.294 MB
Main genome contig sequence total: 1410.029 MB 41.548% gap
Main genome scaffold N/L50: 409067/1.293 KB
Main genome contig N/L50: 597857/636
Main genome scaffold N/L90: 1983949/344
Main genome contig N/L90: 2220735/190
Max scaffold length: 150.361 KB
Max contig length: 12.873 KB
Number of scaffolds > 50 KB: 5
% main genome in scaffolds > 50 KB: 0.02%
Minimum Number Number Total Total Scaffold
Scaffold of of Scaffold Contig Contig
Length Scaffolds Contigs Length Length Coverage
-------- -------------- -------------- -------------- -------------- --------
All 2,976,459 5,198,254 2,412,294,157 1,410,029,461 58.45%
50 2,976,445 5,198,240 2,412,293,642 1,410,028,986 58.45%
100 2,975,826 5,197,575 2,412,241,046 1,409,981,379 58.45%
250 2,564,085 4,682,404 2,322,148,707 1,356,240,816 58.40%
500 1,240,818 2,828,912 1,840,225,491 1,124,779,458 61.12%
1 KB 557,776 1,671,181 1,375,087,261 886,032,186 64.43%
2.5 KB 164,976 681,296 776,634,207 529,384,497 68.16%
5 KB 48,523 184,381 378,160,426 269,958,564 71.39%
10 KB 8,023 -665 107,428,654 79,884,077 74.36%
25 KB 119 -193 3,760,869 2,830,847 75.27%
50 KB 5 -149 436,408 345,213 79.10%
100 KB 1 -320 150,361 115,174 76.60%